* {
    box-sizing: border-box;
    word-wrap: break-word;
}

/* Variable declarations */
:root {
    --dark-green: #105938;
    --light-green: #197650;
    --grey: #D0D0CE;
    --num-card-columns: 3;
}

html {
    overflow-y: scroll;
}

body {
    background-color: white;
    font-family: 'Open Sans', sans-serif;
    font-size: 16px;
    line-height: 1.5;
    color: black;
    margin: 0;
    padding: 0;
}

h1, h2, h3, h4, h5, h6 {
    font-family: 'Montserrat', sans-serif;
    font-weight: 400;
    margin: 0;
    padding: 0;
}

/* Header formatting */
header {
    background-color: white;
    position: fixed;
    top: 0;
    width: 100%;
    z-index: 999;
}

.title {
    padding: 20px 10px;
    display: flex;
    align-items: center;
}

img {
    width: auto;
    height: 3rem;
}

.logo-container {
    float: left;
    border-right: 1px solid var(--grey);
    padding: 10px 10px 0 10px;
    margin-right: 10px;
}

nav {
    width: 100%;
    text-align: right;
    padding-top: 5.25px;
    padding-bottom: 5.25px;
    background-color: var(--grey);
}

header ul {
    list-style: none;
    margin: 0;
    padding: 0;
    padding-right: 1rem;
}

header li {
    display: inline-block;
}

a {
    text-decoration: none;
}

header nav a {
    color: #000000;
    padding:0.5rem;
}

header nav a:hover {
    color: white;
    background-color: var(--dark-green);
}

.header-block {
    height: var(--header-height, 100px);
}

/* Basic container formatting */
.container {
    margin: 20px 4.5%;
    background-color: white;
}

    .container[id] {
        scroll-margin-top: calc(var(--header-height, 100px) + 10px);
    }

    .container-header {
        width: 100%;
        border-top-right-radius: 10px;
        border-top-left-radius: 10px;
        border: 1px solid #000000;
        background-color: var(--grey);
        /*padding-bottom: 5px;*/
        height: 63px;
        display: flex;
        flex-direction: column;
    }

        .container-header h2 {
            margin: 10px;
            margin-left: 20px;
        }

    .container-body {
        width: 100%;
        border-left: 1px solid #000000;
        border-right: 1px solid #000000;
        padding: 0 10px;
        word-wrap: break-word;
    }

        .container-body p {
            margin: 0;
        }

    .container-footer {
        width: 100%;
        height: 100%;
        border-bottom-right-radius: 10px;
        border-bottom-left-radius: 10px;
        border: 1px solid #000000;
        border-top: none;
        padding-top: 5px;
        overflow: hidden;
    }

        .container-footer p {
            float: right;
            margin: 5px 10px;
        }

    a {
    color: var(--light-green);
    }

    a:hover {
        color: var(--dark-green);
    }
        

/* Input-specific formatting */
    .tab-container {
        flex-grow: 0;
        flex-shrink: 0;
        height: 85%;
        display: flex;
        margin-top: auto;
        overflow: hidden;
        margin-left: 10px;
    }

        .input-header {
            display: flex;
            align-items: center;
        }

            .input-header h3 {
                margin: 0 5px;
                font-weight: 600;
                font-size: medium;
            }

        .tab {
            border-top-right-radius: 5px;
            border-top-left-radius: 5px;
            display: inline-flex;
            padding: 0 10px;
            align-items: center;
            justify-content: center;
        }

            .tab h2 {
                font-size: 20px;
                margin: 0;
                display: inline;
                white-space: nowrap;
            }

            .tab:hover {
                cursor: pointer;
            }

            .selected {
                display: flex;
                background-color: var(--light-green);
                color: white;
                border-bottom: none;
                border-top: #000000 1px solid;
                border-left: #000000 1px solid;
                border-right: #000000 1px solid;
            }

            .unselected {
                height: 90%;
                margin-top: auto;
                display: flex;
                background-color: var(--grey);
                color: #000000;
                border-top: var(--grey) 1px solid;
                border-left: var(--grey) 1px solid;
                border-right: var(--grey) 1px solid;
            }

                .unselected:hover {
                    border-top: #000000 1px solid;
                    border-left: #000000 1px solid;
                    border-right: #000000 1px solid;
                }


    .container-body textarea {
        width: 100%;
        height: 100%;
        box-sizing: border-box;
        border: 1px solid #000000;
        border-radius: 10px;
        padding: 10px;
        margin-top: 10px;
        font-size: 14px;
        resize: none;
    }

        .container-body textarea:focus {
            outline: 2px solid var(--light-green);
            border-color: var(--light-green);
        }

    /* Query/PSI-BLAST File upload */
    .file-input-container {
        display: flex;
        align-items: center;
    }

        .input-file {
            width: 0.1px;
            height: 0.1px;
            opacity: 0;
            overflow: hidden;
            position: absolute;
            z-index: -1;
        }

            #upload-svg {
                width: 18px;
                height: 18px;
                margin-right: 5px;
            }

            .input-file + label {
                font-size: 1em;
                font-weight: 700;
                color: white;
                background-color: var(--light-green);
                display: inline-block;
                padding: 10px;
                border-radius: 10px;
            }

                .input-file:focus + label{
                    outline: 1px dotted #000;
                    outline: -webkit-focus-ring-color auto 5px;
                }

                .input-file + label:hover {
                    background-color: var(--dark-green);
                    cursor: pointer;
                }

        #file-trash {
            margin-left: 10px;
            width: 24px;
            height: 24px;
        }

            #file-trash:hover {
                cursor: pointer;
                color: var(--dark-green);
            }

    /* GenBank File Upload Area */
    .file-drop-area {
        border: 2px dashed var(--grey);
        border-radius: 10px;
        width: 95%;
        padding: 70px;
        text-align: center;
        margin: auto;
        margin-left: 0;
    }

    .file-drop-area.highlight {
        border-color: var(--light-green);
    }

        .file-drop-area:hover {
            cursor: pointer;
            border-color: var(--light-green);
        }

    #genbank-file-input, #label-files-input, #gb-single-input {
        display: none;
    }

    .uploaded-file-list {
        width: 100%;
        padding: 0 2.5%;
        margin-top: 0;
        margin-bottom: 0;
    }

        .uploaded-file-list p {
            margin-right: 10px;
            display: inline;
        }

    .uploaded-file-list div:nth-child(even) {
        color: black;
    }

    .uploaded-file-list div:nth-child(odd) {
        color: rgb(110, 110, 110);
    }

    .uploaded-file-item {
        display: inline;
        margin-right: 10px;
    }

        .uploaded-file-item p {
            margin: 0;
            padding: 0;
            word-break: keep-all;
        }

        .uploaded-file-item:hover {
            cursor: pointer;
            color: red !important;
        }

    /* Label File for GenBank File Input Screen Upload */
        /* Query/PSI-BLAST File upload */
        .label-file-input-container {
            display: inline-block;
            align-items: center;
        }
    
            .gb-label-file {
                width: 0;
                height: 0;
                opacity: 0;
                overflow: hidden;
                position: absolute;
                z-index: -1;
            }
    
                #gb-upload-svg {
                    width: 18.5px;
                    height: 18.5px;
                    margin-right: 5px;
                }
    
                .gb-label-file + label {
                    font-size: 1em;
                    /* font-weight: 700; */
                    color: white;
                    background-color: var(--light-green);
                    display: inline-block;
                    padding: 10px;
                    border-radius: 10px;
                    /* margin-left: 30px;
                    margin-bottom: 10px; */
                }
    
                    .gb-label-file:focus + label{
                        outline: 1px dotted #000;
                        outline: -webkit-focus-ring-color auto 5px;
                    }
    
                    .gb-label-file + label:hover {
                        background-color: var(--dark-green);
                        cursor: pointer;
                    }
    
            #gb-file-trash {
                margin-left: 10px;
                width: 24px;
                height: 24px;
            }
    
                #gb-file-trash:hover {
                    cursor: pointer;
                    color: var(--dark-green);
                }

    /* Submit/Plot button */
    .input-button-area {
        display: flex;
        justify-content: space-between;
        align-items: center;
        position: relative;
    }
    
    /*.button-container button {
        font-size: 1em;
        background-color: var(--light-green);
        color: white;
        border: none;
        border-radius: 10px;
        padding: 10px;
        float: right;
        margin-right: 20px;
        margin-bottom: 10px;
    }

    .button-container button:hover {
        background-color: var(--dark-green);
        cursor: pointer;
    }*/

    .button-container {
        display: flex;
        /* justify-content: flex-end; */
        align-items: center;
        width: 100%;
        padding: 10px;
        padding-bottom: 20px;
    }

    .submit-button {
        font-size: 16.5px; /* Changed font size here because for some reason font size inside and outside of
                              a button is 0.5 different, so 1em strong outside = 16.5px inside */
        color: white;
        border: none;
        border-radius: 10px;
        padding: 10px;
        margin-right: 20px;
        line-height: 1.5;
        /* margin-bottom: 10px; */
    }

        .enabled-button {
            background-color: var(--light-green);
        }

            .enabled-button:hover {
                cursor: pointer;
                background-color: var(--dark-green);
            }

        .disabled-button {
            background-color: var(--grey);
        }

            .disabled-button:hover {
                cursor: not-allowed;
                background-color: var(--grey);
            }


/* Error and Output bodies alternate colours */
.alternate-colours .container-body:nth-child(even) {
    background-color: #f0f0f0;
}

.textp {
    margin: 0;
    padding: 0;
    white-space: pre-wrap;
}


/* Job retrieval formatting */
.job-button {
    font-size: 1em;
    font-weight: bold;
    color: white;
    border: none;
    border-radius: 10px;
    padding: 10px;
    margin-bottom: 10px;
    margin-top: 10px;
    background-color: var(--light-green)
}

    .job-button:hover {
        background-color: var(--dark-green);
        cursor: pointer;
    }

.job-input {
    border-radius: 10px;
    border: 1px solid var(--light-green);
    transition: border-color 0.3s ease;
    padding: 7px;
    margin-left: 5px;
    margin-right: 5px;
}

    .job-input:focus {
        border-color: var(--dark-green);
        box-shadow: 0 0 5px var(--dark-green);
        outline: none;
    }


/* Output formatting */
.modal {
    z-index: 10000;
    display: none;
    position: fixed;
    top: 0;
    left: 0;
    width: 100%;
    height: 100%;
    background-color: rgba(0, 0, 0, 0.5);
    justify-content: center;
    align-items: center;
}

    .modal-content {
        z-index: 10001;
        background-color: white;
        margin: 10%;
        padding: 20px;
        border-radius: 5px;
    }

.output-area {
    display: flex;
    height: calc(100vh - var(--header-height, 100px));
    width: 100vw;
}
            
    .output-area .directory-container {
        width: 33%;
        overflow: auto;
    }

        .directory-header {
            display: flex;
            align-items: center;
            justify-content: space-between;
            /* background-color: var(--grey); */
        }

            .directory-container button {
                margin: 0;
                margin-right: 5px;
                margin-left: 5px;
                border: none;
                background-color: transparent;
                color: var(--dark-green)
            }

                .directory-container button:hover {
                    color: var(--light-green);
                    cursor: pointer;
                }

            .dashboard-button {
                margin: 0;
                margin-right: 5px;
                margin-left: 5px;
                border: none;
                background-color: transparent;
                color: var(--dark-green)
            }

                .dashboard-button:hover {
                    color: var(--light-green);
                    cursor: pointer;
                }

        .directory-container *:hover {
            cursor: pointer;
        }

        .grey-divider {
            width: 100%;
            height: 7px;
            background-color: var(--grey);
        }
            
            .directory-list {
                list-style-type: none;
                padding: 0;
                margin: 0;
                margin-left: 5px;
            }
            
            .directory-line {
                display: flex;
                align-items: center;
                white-space: nowrap; /* Prevent text from wrapping */
            }
            
            .directory-line p {
                white-space: nowrap; /* Prevent text from wrapping */
                margin: 0;           /* Remove default margin from <p> */
            }
            
            .directory-line svg {
                flex-shrink: 0;      /* Prevent the SVG from shrinking */
                margin-right: 2px;   /* Add some spacing between SVG and <p> */
            }
            
            .file-line {
                display: flex;
                align-items: center;
                white-space: nowrap; /* Prevent text from wrapping */
            }
            
            .file-line p {
                white-space: nowrap; /* Prevent text from wrapping */
                margin: 0;           /* Remove default margin from <p> */
            }
            
            .file-line svg {
                flex-shrink: 0;      /* Prevent the SVG from shrinking */
                margin-right: 2px;   /* Add some spacing between SVG and <p> */
            }

            .directory-list ul {
                padding-left: 8px;  /* Indent nested lists */
            }

    .splitter {
        width: 10px;
        cursor: col-resize;
        background-color: var(--grey);
        user-select: none;
        z-index: 3;
    }

    #overlay {
        position: fixed;
        top: 0;
        left: 0;
        width: 100vw;
        height: 100vh;
        background-color: transparent;
        z-index: 2;
    }

    .output-area .file-container {
        flex: 1 1 auto;
        overflow: auto;
        z-index: 1;
        display: flex;
        flex-direction: column;
        height: 100%;
        position: relative;
    }

        .output-area .file-container .file-header {
            background-color: var(--grey);
            display: flex;
            flex-direction: column;
            align-items: flex-start;
        }

            .output-area .file-container .file-header h2 {
                margin: 0;
                margin-left: 10px;
                word-break: break-all;
            }

            .output-area .file-container .file-header .file-header-buttons {
                display: flex;
                flex-wrap: wrap;
            }

            .output-area .file-container .file-header button {
                margin: 0;
                margin-right: 5px;
                margin-left: 5px;
                border: none;
                background-color: transparent;
                color: var(--dark-green)
            }

                .output-area .file-container .file-header button:hover {
                    color: var(--light-green);
                    cursor: pointer;
                }

        .output-area .file-container iframe {
            border: none;
            flex: 1;
            overflow: auto;
        }

/* Help Formatting */
.input-example {
    font-size: 10pt;
    font-family: monospace;
    margin-left: 5%;
}

/* Dashboard Formatting */
.dashboard {
    z-index: 500;
    position: fixed;
    top: var(--header-height, 100px);
    left: 0;
    right: 0;
    bottom: 0;
    height: calc(100vh - var(--header-height, 100px));
    background: white;
    overflow: auto;
}

.grid {
    display: grid;
    grid-template-columns: repeat(auto-fit, var(--min-card-width, 250px));
    gap: 20px;
    margin: 15px 20px;

    /* justify-content: center; */
}

.card {
    width: 100%;
    background: white;
    border: 1px solid #ccc;
    border-radius: 8px;
    padding: 10px;
    aspect-ratio: 1.5 / 1;
    box-shadow: 2px 2px 8px rgba(0,0,0,0.1);
    transition: transform 0.2s ease;
    max-height: 77vh;
    max-width: var(--min-card-width);

    display: flex;
    flex-direction: column;
    justify-content: space-between;
    align-items: center;

    text-decoration: none;
    color: inherit;

    contain: layout paint;
}

.card:hover {
    transform: scale(1.02);
    box-shadow: 3px 3px 12px rgba(0,0,0,0.2);
    cursor: pointer;
}

.card .card-svg {
    flex-grow: 1;
    display: flex;
    align-items: center;
    justify-content: center;
    width: 100%;
    height: 100%;
    overflow: hidden;
}

.card svg {
    max-width: 90%;
    max-height: 90%;

    /* width: 100%; */
    height: auto;
    display: block;
    /* flex-direction: column;
    justify-content: center; */
    cursor: pointer;
}

.label {
    margin-top: 8px;
    font-size: 0.9em;
    text-align: center;
    word-break: break-all;

    line-height: 1.2em;
    height: 3.6em;

    /* Truncate label text after 3 lines */
    overflow: hidden;
    display: -webkit-box;
    -webkit-line-clamp: 3;
            line-clamp: 3;
    -webkit-box-orient: vertical;
}

.zoom-button {
    padding: 6px;
    color: var(--dark-green);
}

    .zoom-button:hover {
        color: var(--light-green);
        cursor: pointer;
    }

/* Spinner style */
.loading {
	position: absolute;
	top: 50%;
	left: 50%;
	transform: translate(-50%, -50%);
	z-index: 1000;
}

.spinner-container {
	display: flex;
	justify-content: center;
	align-items: center;
	height: 200px;
  }
  
  .spinner {
	position: relative;
	width: 100px;
	height: 100px;
  }
  
  .dot {
	--i: 0;
	--angle: calc(var(--i) * 45deg); /* 8 dots around 360° */
	--radius: 40px;
  
	position: absolute;
	top: 50%;
	left: 50%;
	transform: rotate(var(--angle)) translate(var(--radius)) rotate(calc(-1 * var(--angle)));
  }
  
  .dot::before {
	content: '';
	display: block;
	width: 12px;
	height: 12px;
	border-radius: 50%;
	background-color: var(--dark-green);
	animation: pulse 1.5s infinite;
	animation-delay: calc((7 - var(--i)) * -0.1875s); /* clockwise delay cycle */
  }
  
  @keyframes pulse {
	0%, 100% {
	  transform: scale(1);
	  opacity: 0; /* invisible at smallest */
	}
	50% {
	  transform: scale(1.5);
	  opacity: 1; /* fully visible at largest */
	}
  }